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1

Data Analysis for the Life Sciences with R || Getting Started

Irizarry, Rafael A., Love, Michael I.

Year:

2016

Language:

english

File:

PDF, 2.65 MB

english, 2016

2

Data Analysis for the Life Sciences with R || Exploratory Data Analysis

Irizarry, Rafael A., Love, Michael I.

Year:

2016

Language:

english

File:

PDF, 22.21 MB

english, 2016

3

A Primer on the History of Food Web Ecology: Fundamental Contributions of Fourteen Researchers

Layman, Craig A., Giery, Sean T., Buhler, Stephanie, Rossi, Ryann, Penland, Tiffany, Henson, Mary N., Bogdanoff, Alex K., Cove, Michael V., Irizarry, Amarilys D., Schalk, Christopher M., Archer, Steph

Journal:

Year:

2015

Language:

english

File:

PDF, 699 KB

english, 2015

4

Data Analysis for the Life Sciences with R || Inference

Irizarry, Rafael A., Love, Michael I.

Year:

2016

Language:

english

File:

PDF, 11.82 MB

english, 2016

5

Millimeter-Wave Downlink Coverage Extension Strategies

Baenke, Jeffrey, Chaudhuri, Kausik Ray, Deshpande, Abhishek, Halder, Atanu, Irizarry, Michael, Saxena, Narothum, Sharma, Sanjay, Yang, Roberto

Journal:

IEEE Communications Magazine

Year:

2020

File:

PDF, 739 KB

2020

6

Intracytoplasmic Inclusions in Circulating Leukocytes from an Eastern Box Turtle (Terrapene carolina carolina) with Iridoviral Infection

Allender, Matthew C., Fry, Michael M., Irizarry, Armando R., Craig, Linden, Johnson, April J., Jones, Michael

Journal:

Journal of Wildlife Diseases

Year:

2006

Language:

english

File:

PDF, 940 KB

english, 2006

7

Development and validation of an algorithm for identifying urinary retention in a cohort of patients with epilepsy in a large US administrative claims database

Quinlan, Scott C., Cheng, Wendy Y., Ishihara, Lianna, Irizarry, Michael C., Holick, Crystal N., Duh, Mei Sheng

Journal:

Pharmacoepidemiology and Drug Safety

Year:

2016

Language:

english

File:

PDF, 405 KB

english, 2016

8

Prader Willi Syndrome

Irizarry, Krystal A., Miller, Mark, Freemark, Michael, Haqq, Andrea M.

Journal:

Advances in Pediatrics

Year:

2016

Language:

english

File:

PDF, 740 KB

english, 2016

9

Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation

Love, Michael I, Hogenesch, John B, Irizarry, Rafael A

Journal:

Nature Biotechnology

Year:

2016

Language:

english

File:

PDF, 839 KB

english, 2016

10

Data Analysis for the Life Sciences with R || Linear Models

Irizarry, Rafael A., Love, Michael I.

Year:

2016

Language:

english

File:

PDF, 7.35 MB

english, 2016

11

Data Analysis for the Life Sciences with R || Inference for High Dimensional Data

Irizarry, Rafael A., Love, Michael I.

Year:

2016

Language:

english

File:

PDF, 9.44 MB

english, 2016

12

Data Analysis for the Life Sciences with R || Matrix Algebra

Irizarry, Rafael A., Love, Michael I.

Year:

2016

Language:

english

File:

PDF, 5.35 MB

english, 2016

13

A Comparative Study of Voice Quality and Coverage for Voice over Long Term Evolution Calls Using Different Codec Mode-sets

Abichandani, Jaideep, Baenke, Jeff, Irizarry, Michael, Saxena, Narothum, Vyas, Purva, Prasad, Sanjay, Mada, Shruti, Tafesse, Yohannes

Journal:

Year:

2017

Language:

english

File:

PDF, 4.52 MB

english, 2017

14

AN UNUSUAL PRESENTATION OF CHRONIC COUGH: PLASTIC BRONCHITIS AND CHYLOPTYSIS

Irizarry, Giovanni Veloz, Cruz, Michael, Fernandez, Ricardo

Journal:

Year:

2020

File:

PDF, 64 KB

2020

15

Apolipoprotein E facilitates neuritic and cerebrovascular plaque formation in an Alzheimer's disease model

David M. Holtzman, Anne M. Fagan, Brian Mackey, Tanya Tenkova, Leah Sartorius, Steven M. Paul, Kelly Bales, Karen Hsiao Ashe, Michael C. Irizarry, Bradley T. Hyman

Journal:

Annals of Neurology

Year:

2000

Language:

english

File:

PDF, 2.14 MB

english, 2000

16

A turn of the sulfatide in Alzheimer's disease

Michael C. Irizarry

Journal:

Annals of Neurology

Year:

2003

Language:

english

File:

PDF, 42 KB

english, 2003

17

Help! to the rescue in Rio Rancho

Maureen Hardy, Michael Irizarry, Stephen Penrice, Andrew Vogt

Journal:

Mathematical Modelling

Year:

1986

Language:

english

File:

PDF, 529 KB

english, 1986

18

Exploring differential prescribing between anti-epileptic drugs in epilepsy patients with a history of mood disorders

Lianna Ishihara, David J. Webb, Michael Irizarry, John Weil

Journal:

Pharmacoepidemiology and Drug Safety

Year:

2010

Language:

english

File:

PDF, 833 KB

english, 2010

19

Risk of cancer in patients exposed to gabapentin in two electronic medical record systems

Michael C. Irizarry, David J. Webb, Nada Boudiaf, John Logie, Laurel A. Habel, Natalia Udaltsova, Gary D. Friedman

Journal:

Pharmacoepidemiology and Drug Safety

Year:

2012

Language:

english

File:

PDF, 172 KB

english, 2012

20

Clinical and biochemical correlates of insoluble α-synuclein in dementia with Lewy bodies

Jochen Klucken, Martin Ingelsson, Youngah Shin, Michael C. Irizarry, E. T. Hedley-Whyte, Matthew P. Frosch, John H. Growdon, Pamela J. McLean, Bradley T. Hyman

Journal:

Acta Neuropathologica

Year:

2006

Language:

english

File:

PDF, 533 KB

english, 2006

21

Apolipoprotein E affects the amount, form, and anatomical distribution of amyloid β-peptide deposition in homozygous APPV717Ftransgenic mice

Michael C. Irizarry, Bonnie S. Cheung, G. William Rebeck, Steven M. Paul, Kelly R. Bales, B. T. Hyman

Journal:

Acta Neuropathologica

Year:

2000

Language:

english

File:

PDF, 358 KB

english, 2000

22

Alpha-synuclein has an altered conformation and shows a tight intermolecular interaction with ubiquitin in Lewy bodies

Nutan Sharma, Pamela J. McLean, Hibiki Kawamata, Michael C. Irizarry, Bradley T. Hyman

Journal:

Acta Neuropathologica

Year:

2001

Language:

english

File:

PDF, 90 KB

english, 2001

23

Apolipoprotein E modulates γ-secretase cleavage of the amyloid precursor protein

Michael C. Irizarry, Amy Deng, Alberto Lleo, Oksana Berezovska, Christine A. F. Von Arnim, Matthew Martin-Rehrmann, Arlene Manelli, Mary Jo LaDu, Bradley T. Hyman, G. William Rebeck

Journal:

Journal of Neurochemistry

Year:

2004

Language:

english

File:

PDF, 384 KB

english, 2004

24

10.1038/6374

Hsiao, Karen K., Chapman, Paul F., White, Gail L., Jones, Matthew W., Cooper-Blacketer, Deirdre, Marshall, Vanessa J., Irizarry, Michael, Younkin, Linda, Good, Mark A., Bliss, T. V. P., Hyman, Bradley

Journal:

Nature Neuroscience

Year:

1999

Language:

english

File:

PDF, 210 KB

english, 1999

25

The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

Irizarry, Rafael A, Ladd-Acosta, Christine, Wen, Bo, Wu, Zhijin, Montano, Carolina, Onyango, Patrick, Cui, Hengmi, Gabo, Kevin, Rongione, Michael, Webster, Maree

Journal:

Nature Genetics

Year:

2009

Language:

english

File:

PDF, 2.57 MB

english, 2009

26

Nonsteroidal anti-inflammatory drugs lower Aβ42 and change presenilin 1 conformation

Lleó, Alberto, Berezovska, Oksana, Herl, Lauren, Raju, Susan, Deng, Amy, Bacskai, Brian J, Frosch, Matthew P, Irizarry, Michael, Hyman, Bradley T

Journal:

Nature Medicine

Year:

2004

Language:

english

File:

PDF, 519 KB

english, 2004

27

A gene expression bar code for microarray data

Zilliox, Michael J, Irizarry, Rafael A

Journal:

Year:

2007

Language:

english

File:

PDF, 216 KB

english, 2007

28

Abstinence Education for Urban Youth

Linda Carter-Jessop, Lisa N. Franklin, James W. Heath, Gladys Jimenez-Irizarry, Michael D. Peace

Journal:

Journal of Community Health

Year:

2000

Language:

english

File:

PDF, 62 KB

english, 2000

29

Expression of APP pathway mRNAs and proteins in Alzheimer’s disease

Toshifumi Matsui, Martin Ingelsson, Hiroaki Fukumoto, Karunya Ramasamy, Hisatomo Kowa, Matthew P. Frosch, Michael C. Irizarry, Bradley T. Hyman

Journal:

Year:

2007

Language:

english

File:

PDF, 399 KB

english, 2007

30

Background incidence of liver chemistry abnormalities in pediatric clinical trials for conditions with and without underlying liver disease

Heide A. Stirnadel, Chanchal Bains, Mynepalli Lakshmi, Rakesh Pandey, David J. Webb, Michael C. Irizarry, Christine M. Hunt

Journal:

Regulatory Toxicology and Pharmacology

Year:

2012

Language:

english

File:

PDF, 195 KB

english, 2012

31

Cocaine-associated cerebral vasculitis

Peter A. Merkel, Walter J. Koroshetz, Michael C. Irizarry, Merit E. Cudkowicz

Journal:

Seminars in Arthritis and Rheumatism

Year:

1995

Language:

english

File:

PDF, 3.16 MB

english, 1995

32

Delayed Complications Thirty-Six Years After Hemispherectomy: A Case Report

Steven N. Kalkanis, Hal Blumenfeld, Janet C. Sherman, David E. Krebs, Michael C. Irizarry, Stephen W. Parker, G. Rees Cosgrove

Journal:

Year:

1996

Language:

english

File:

PDF, 517 KB

english, 1996

33

A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB

Tim F Rayner, Philippe Rocca-Serra, Paul T Spellman, Helen C Causton, Anna Farne, Ele Holloway, Rafael A Irizarry, Junmin Liu, Donald S Maier, Michael Miller, Kjell Petersen, John Quackenbush, Gavin S

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 1.37 MB

english, 2006

34

Performance evaluation of commercial miRNA expression array platforms

Sachin Sah, Matthew N McCall, Deepa Eveleigh, Michael Wilson, Rafael A Irizarry

Journal:

BMC Research Notes

Year:

2010

Language:

english

File:

PDF, 873 KB

english, 2010

35

Glutamate Receptor Dysregulation in the Hippocampus of Transgenic Mice Carrying Mutated Human Amyloid Precursor Protein

Jang-Ho J. Cha, Laurie A. Farrell, Sharlin F. Ahmed, Ariel Frey, Karen K. Hsiao-Ashe, Anne B. Young, John B. Penney, Joseph J. Locascio, Bradley T. Hyman, Michael C. Irizarry

Journal:

Neurobiology of Disease

Year:

2001

Language:

english

File:

PDF, 140 KB

english, 2001

36

Decreased levels of BDNF protein in Alzheimer temporal cortex are independent of BDNF polymorphisms

Jung Lee, Hiroaki Fukumoto, Jennifer Orne, Jochen Klucken, Susan Raju, Charles R. Vanderburg, Michael C. Irizarry, Bradley T. Hyman, Martin Ingelsson

Journal:

Experimental Neurology

Year:

2005

Language:

english

File:

PDF, 346 KB

english, 2005

37

Nucleocytosolic Acetyl-Coenzyme A Synthetase Is Required for Histone Acetylation and Global Transcription

Hidekazu Takahashi, J. Michael McCaffery, Rafael A. Irizarry, Jef D. Boeke

Journal:

Year:

2006

Language:

english

File:

PDF, 673 KB

english, 2006

38

Lack of association of the cholesterol 24-hydroxylase (CYP46) intron 2 polymorphism with Alzheimer’s disease

Martin Ingelsson, Jennifer Jesneck, Michael C. Irizarry, Bradley T. Hyman, G.William Rebeck

Journal:

Neuroscience Letters

Year:

2004

Language:

english

File:

PDF, 104 KB

english, 2004

39

The normal equilibrium between CSF and plasma amyloid beta levels is disrupted in Alzheimer's disease

Vilmantas Giedraitis, Johan Sundelöf, Michael C. Irizarry, Nina Gårevik, Bradley T. Hyman, Lars-Olof Wahlund, Martin Ingelsson, Lars Lannfelt

Journal:

Neuroscience Letters

Year:

2007

Language:

english

File:

PDF, 392 KB

english, 2007

40

Risk factors for antiepileptic drug regimen change in patients with newly diagnosed epilepsy

Marianne C. Cunnington, David J. Webb, Michael C. Irizarry, Ranjani Manjunath

Journal:

Epilepsy & Behavior

Year:

2011

Language:

english

File:

PDF, 216 KB

english, 2011

41

Elevation of Cystatin C in Susceptible Neurons in Alzheimer's Disease

Amy Deng, Michael C. Irizarry, Roger M. Nitsch, John H. Growdon, G. William Rebeck

Journal:

The American Journal of Pathology

Year:

2001

Language:

english

File:

PDF, 2.17 MB

english, 2001

42

β-Secretase Activity Increases with Aging in Human, Monkey, and Mouse Brain

Hiroaki Fukumoto, Douglas L. Rosene, Mark B. Moss, Susan Raju, Bradley T. Hyman, Michael C. Irizarry

Journal:

The American Journal of Pathology

Year:

2004

Language:

english

File:

PDF, 399 KB

english, 2004

43

β-Site APP Cleaving Enzyme mRNA Expression in APP Transgenic Mice: Anatomical Overlap with Transgene Expression and Static Levels with Aging

Michael C. Irizarry, Joseph J. Locascio, Bradley T. Hyman

Journal:

The American Journal of Pathology

Year:

2001

Language:

english

File:

PDF, 373 KB

english, 2001

44

Age-Related Amyloid β Deposition in Transgenic Mice Overexpressing Both Alzheimer Mutant Presenilin 1 and Amyloid β Precursor Protein Swedish Mutant Is Not Associated with Global Neuronal Loss

Ayano Takeuchi, Michael C. Irizarry, Karen Duff, Takaomi C. Saido, Karen Hsiao Ashe, Masato Hasegawa, David M.A. Mann, Bradley T. Hyman, Takeshi Iwatsubo

Journal:

The American Journal of Pathology

Year:

2000

Language:

english

File:

PDF, 917 KB

english, 2000

45

APOE ε3/ε4 heterozygotes have an elevated proportion of apolipoprotein E4 in cerebrospinal fluid relative to plasma, independent of Alzheimer’s disease diagnosis

Hiroaki Fukumoto, Martin Ingelsson, Nina Gårevik, Lars-Olof Wahlund, Nobuyuki Nukina, Yoshio Yaguchi, Masao Shibata, Bradley T. Hyman, G.William Rebeck, Michael C. Irizarry

Journal:

Experimental Neurology

Year:

2003

Language:

english

File:

PDF, 74 KB

english, 2003

46

Parasomnias as Neuropsychiatric Complications of Electrical Injury

S. Nassir Ghaemi, Michael C. Irizarry

Journal:

Year:

1995

Language:

english

File:

PDF, 150 KB

english, 1995

47

LRP and senile plaques in Alzheimer’s disease: colocalization with apolipoprotein E and with activated astrocytes

Katrin Arélin, Ayae Kinoshita, Christa M Whelan, Michael C Irizarry, G.William Rebeck, Dudley K Strickland, Bradley T Hyman

Journal:

Molecular Brain Research

Year:

2002

Language:

english

File:

PDF, 1.16 MB

english, 2002

48

Role of APOE in Alzheimer's disease-like neurodegeneration

David M. Holtzman, Anne M. Fagan, Kelly R. Bales, Ronald DeMattos, Michael C. Irizarry, Karen H. Ashe, Bradley T. Hyman, Steven M. Paul

Journal:

Neurobiology of Aging

Year:

2000

Language:

english

File:

PDF, 396 KB

english, 2000

49

Motor dysfunction and gliosis with preserved dopaminergic markers in human α-synuclein A30P transgenic mice

Teresa Gomez-Isla, Michael C Irizarry, Ami Mariash, Bonnie Cheung, Oscar Soto, Stefanie Schrump, Jesse Sondel, Linda Kotilinek, John Day, Michael A Schwarzschild, Jang-Ho J Cha, Kathy Newell, David W

Journal:

Neurobiology of Aging

Year:

2003

Language:

english

File:

PDF, 789 KB

english, 2003

50

O1-03-01 Apolipoprotein E inhibits gamma-secretase cleavage of the amyloid precursor protein

G. William Rebeck, Amy Deng, Bradley T. Hyman, Michael C. Irizarry

Journal:

Neurobiology of Aging

Year:

2004

Language:

english

File:

PDF, 156 KB

english, 2004